STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180562UPF0686 protein C11orf1 homolog. (156 aa)    
Predicted Functional Partners:
LOC100180876
Uncharacterized protein C1orf158 homolog.
   
   0.520
H2XT39_CIOIN
Uncharacterized protein.
   
   0.520
F6Y3N8_CIOIN
EF-hand domain-containing protein.
   
   0.478
F7AR88_CIOIN
Uncharacterized protein.
   
   0.478
F6SIS7_CIOIN
Uncharacterized protein.
   
   0.475
LOC100187227
Uncharacterized protein C5orf49.
   
   0.475
tektinB1
Tektin B1.
   
   0.474
F6RLP1_CIOIN
Uncharacterized protein.
   
   0.467
F6YUP1_CIOIN
Uncharacterized protein.
    
   0.456
LOC100176448
Protein C9orf135-like.
    
   0.456
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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