Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100180562UPF0686 protein C11orf1 homolog. (156 aa)    
Predicted Functional Partners:
LOC100185469
Uncharacterized protein.
    
 
 0.971
F6UM48_CIOIN
Uncharacterized protein.
    
   0.956
LOC100185443
Protein Flattop-like.
    
 
 0.945
LOC100187227
Uncharacterized protein C5orf49.
   
 
 0.935
LOC100183262
Uncharacterized protein LOC100183262.
    
   0.899
F6TDK2_CIOIN
Uncharacterized protein.
   
   0.896
LOC100176448
Protein C9orf135-like.
   
   0.894
F7A7P7_CIOIN
Enkurin domain-containing protein.
    
   0.892
ci-ndk/dm44
Radial spoke protein NDK/DM44; Belongs to the NDK family.
    
   0.892
H2XMC6_CIOIN
Uncharacterized protein.
    
   0.892
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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