F6UJI9_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6UJI9_CIOIN

Uncharacterized protein. (487 aa)

Predicted Functional Partners:

LOC100186458

0.952

F6UNP2_CIOIN

0.949

LOC100182084

0.944

F6Q0M2_CIOIN

0.937

erk3/4

0.928

LOC100177099

0.864

F6SLD6_CIOIN

0.854

F6YW46_CIOIN

0.847

F7B1X4_CIOIN

0.847

F6RST4_CIOIN

0.834

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6Q0M2_CIOIN	F6RST4_CIOIN	ENSCINP00000009532	ENSCINP00000009600	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	F-BAR domain-containing protein.	0.551
F6Q0M2_CIOIN	F6UJI9_CIOIN	ENSCINP00000009532	ENSCINP00000015409	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.937
F6RST4_CIOIN	F6Q0M2_CIOIN	ENSCINP00000009600	ENSCINP00000009532	F-BAR domain-containing protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.551
F6RST4_CIOIN	F6UJI9_CIOIN	ENSCINP00000009600	ENSCINP00000015409	F-BAR domain-containing protein.	Uncharacterized protein.	0.834
F6SLD6_CIOIN	F6UJI9_CIOIN	ENSCINP00000027486	ENSCINP00000015409	Deacetylase sirtuin-type domain-containing protein.	Uncharacterized protein.	0.854
F6SLD6_CIOIN	LOC100182084	ENSCINP00000027486	ENSCINP00000003393	Deacetylase sirtuin-type domain-containing protein.	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.560
F6UJI9_CIOIN	F6Q0M2_CIOIN	ENSCINP00000015409	ENSCINP00000009532	Uncharacterized protein.	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.	0.937
F6UJI9_CIOIN	F6RST4_CIOIN	ENSCINP00000015409	ENSCINP00000009600	Uncharacterized protein.	F-BAR domain-containing protein.	0.834
F6UJI9_CIOIN	F6SLD6_CIOIN	ENSCINP00000015409	ENSCINP00000027486	Uncharacterized protein.	Deacetylase sirtuin-type domain-containing protein.	0.854
F6UJI9_CIOIN	F6UNP2_CIOIN	ENSCINP00000015409	ENSCINP00000001981	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.949
F6UJI9_CIOIN	F6YW46_CIOIN	ENSCINP00000015409	ENSCINP00000000855	Uncharacterized protein.	PDZ domain-containing protein.	0.847
F6UJI9_CIOIN	F7B1X4_CIOIN	ENSCINP00000015409	ENSCINP00000012774	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.847
F6UJI9_CIOIN	LOC100177099	ENSCINP00000015409	ENSCINP00000013281	Uncharacterized protein.	Protein NRDE2 homolog.	0.864
F6UJI9_CIOIN	LOC100182084	ENSCINP00000015409	ENSCINP00000003393	Uncharacterized protein.	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.944
F6UJI9_CIOIN	LOC100186458	ENSCINP00000015409	ENSCINP00000022179	Uncharacterized protein.	Protein kinase domain-containing protein.	0.952
F6UJI9_CIOIN	erk3/4	ENSCINP00000015409	ENSCINP00000002522	Uncharacterized protein.	Protein kinase domain-containing protein.	0.928
F6UNP2_CIOIN	F6UJI9_CIOIN	ENSCINP00000001981	ENSCINP00000015409	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.949
F6UNP2_CIOIN	F7B1X4_CIOIN	ENSCINP00000001981	ENSCINP00000012774	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.993
F6UNP2_CIOIN	LOC100182084	ENSCINP00000001981	ENSCINP00000003393	WD_REPEATS_REGION domain-containing protein.	Cell division control protein; Involved in the initiation of DNA replication. Also participates in checkpoint controls that ensure DNA replication is completed before mitosis is initiated; Belongs to the CDC6/cdc18 family.	0.925
F6UNP2_CIOIN	LOC100186458	ENSCINP00000001981	ENSCINP00000022179	WD_REPEATS_REGION domain-containing protein.	Protein kinase domain-containing protein.	0.700