STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178482Uncharacterized protein. (180 aa)    
Predicted Functional Partners:
H2XMJ7_CIOIN
IPPc domain-containing protein.
     
 0.961
F6RJ12_CIOIN
Kinase; Belongs to the inositol phosphokinase (IPK) family.
     
 0.956
LOC100185660
Phosphoinositide phospholipase C.
   
 
 0.920
F6SAN3_CIOIN
Phosphoinositide phospholipase C.
   
 
 0.920
F6SF88_CIOIN
Phosphoinositide phospholipase C.
   
 
 0.911
F6S5E1_CIOIN
Uncharacterized protein.
   
 
 0.911
H2XW92_CIOIN
Uncharacterized protein; Belongs to the histidine acid phosphatase family.
     
  0.911
LOC100185018
Uncharacterized protein; Belongs to the histidine acid phosphatase family.
     
  0.911
H2XUH0_CIOIN
Ins134_P3_kin domain-containing protein.
     
  0.900
H2Y3P6_CIOIN
Rho-GAP domain-containing protein.
     
 0.537
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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