Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6SJ40_CIOINRieske domain-containing protein. (536 aa)    
Predicted Functional Partners:
F6W510_CIOIN
Uncharacterized protein.
      
 0.739
F6QI54_CIOIN
Uncharacterized protein.
      
 0.695
F6TXM9_CIOIN
Uncharacterized protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.663
Gataa
Uncharacterized protein.
   
  
 0.634
LOC100178002
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
   
 0.617
H2XTH7_CIOIN
Uncharacterized protein.
   
 
 0.593
F6SNI9_CIOIN
Uncharacterized protein.
      
 0.525
LOC779004
Transcription factor protein.
   
  
 0.521
LOC100181820
Fumarylacetoacetate hydrolase domain-containing protein 2.
     
 0.518
F7AVB6_CIOIN
Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
 0.516
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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