Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
zf(c2h2)-11Uncharacterized protein. (504 aa)    
Predicted Functional Partners:
F6SH39_CIOIN
Uncharacterized protein.
    
 0.842
LOC100179576
CLP1_P domain-containing protein.
      
 0.838
F6YFB9_CIOIN
S1 motif domain-containing protein.
    
 
 0.671
LOC100177118
Uncharacterized protein.
    
   0.551
dsh
Dishevelled homolog.
    
 
 0.524
tr2/4
Uncharacterized protein.
    
 0.520
Q4H3K0_CIOIN
Transcription factor protein.
    
 
 0.514
LOC100175749
60S ribosomal protein L26.
    
 
 0.509
LOC100179556
Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
 
 0.508
LOC100181489
GLTP domain-containing protein.
      
 0.506
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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