STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6Z0B9_CIOINDUF4392 domain-containing protein. (391 aa)    
Predicted Functional Partners:
F6QFQ6_CIOIN
DUF4392 domain-containing protein.
  
  
 
0.901
LOC100182760
Glutaminase kidney isoform, mitochondrial-like.
     
  0.900
F6S034_CIOIN
Uncharacterized protein.
     
  0.900
F6W2N4_CIOIN
Uncharacterized protein.
    
 0.533
F6R9A6_CIOIN
Uncharacterized protein.
    
 0.533
H2XJZ0_CIOIN
Guanylate kinase-like domain-containing protein.
    
 0.533
F6PPJ1_CIOIN
Protein kinase C.
    
 0.513
F7B314_CIOIN
Uncharacterized protein.
    
 0.505
LOC100175009
Partitioning defective protein 6.
    
 0.502
LOC100184954
Uncharacterized protein.
    
 0.499
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.