Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178569ATP-dependent RNA helicase DDX19B. (484 aa)    
Predicted Functional Partners:
H2Y386_CIOIN
Uncharacterized protein.
    
 
 0.959
F6ZBK7_CIOIN
Uncharacterized protein.
   
 
 0.942
F6Q753_CIOIN
Uncharacterized protein.
   
 
 0.877
LOC100184417
Exportin-1.
    
 
 0.844
F7A6B8_CIOIN
Uncharacterized protein.
    
 
 0.793
H2XRV2_CIOIN
Uncharacterized protein.
    
 
 0.793
F6R442_CIOIN
PWI domain-containing protein.
   
 
 0.773
F6ZIK8_CIOIN
Uncharacterized protein.
    
 
 0.744
F6TN36_CIOIN
MIF4G domain-containing protein.
    
   0.732
LOC100182155
Uncharacterized protein.
   
 
 0.724
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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