Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6XT75_CIOINHECT domain-containing protein. (668 aa)    
Predicted Functional Partners:
LOC100180815
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 0.782
F6T8P3_CIOIN
Uncharacterized protein.
   
   0.737
r27a
R27a protein isoform X1.
    
 0.728
F6ZJN8_CIOIN
Uncharacterized protein.
    
 0.695
LOC100175733
Metaxin-1-like.
      
 0.694
LOC100185384
ubiquitin-60S ribosomal protein L40.
    
 0.676
F6WRI9_CIOIN
HECT domain-containing protein.
   
 
 0.627
H2XLP4_CIOIN
Uncharacterized protein.
   
 
 0.627
H2XPT0_CIOIN
Uncharacterized protein.
   
 
 0.627
H2XLD1_CIOIN
Telomere_reg-2 domain-containing protein.
    
 
 0.605
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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