Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100176892Fluoride export protein 2 isoform X1. (405 aa)    
Predicted Functional Partners:
F6S8F6_CIOIN
Chromo domain-containing protein.
    
 0.799
H2XVL0_CIOIN
Uncharacterized protein.
    
 0.799
F6TF50_CIOIN
Uncharacterized protein.
    
 0.596
LOC100176004
PH domain-containing protein.
    
 
 0.569
F7A1B7_CIOIN
Uncharacterized protein.
    
 
 0.569
F7ANR5_CIOIN
CPSF_A domain-containing protein.
    
 
 0.554
LOC100186713
Chromobox protein homolog 1-like.
    
 0.531
F7AHT0_CIOIN
Histone H3; Belongs to the histone H3 family.
    
 0.495
F6R544_CIOIN
Uncharacterized protein.
    
 0.495
LOC100177125
Histone H3.3-like.
    
 0.495
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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