Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6X3C5_CIOINHA2 domain-containing protein. (413 aa)    
Predicted Functional Partners:
F6X3A4_CIOIN
Uncharacterized protein.
 
     0.944
H2XXY4_CIOIN
DZF domain-containing protein.
   
 
 0.860
nf45
NF45 protein isoform X1.
   
 
 0.851
F6UHH9_CIOIN
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.836
LOC104265829
DEAD-box ATP-dependent RNA helicase 20-like; Belongs to the DEAD box helicase family.
   
 0.836
zf(c2h2)-102
ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.
   
 
 0.831
LOC100182742
Nucleolar RNA helicase 2.
   
 0.818
LOC100181118
Polyadenylate-binding protein 2-like.
   
 0.809
F6X134_CIOIN
Uncharacterized protein.
   
 
 0.783
LOC100178376
Male-specific lethal 1 homolog isoform X1.
    
 0.782
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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