Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6WHM9_CIOINUncharacterized protein. (338 aa)    
Predicted Functional Partners:
H2XZN8_CIOIN
WD_REPEATS_REGION domain-containing protein.
    
   0.750
LOC100180700
Thioredoxin domain-containing protein 9-like.
    
   0.731
F7AG76_CIOIN
Uncharacterized protein.
      
 0.720
LOC100181478
T-complex protein 1 subunit epsilon-like.
    
   0.693
H2Y0B3_CIOIN
Uncharacterized protein.
      
 0.688
LOC100183093
Trafficking protein particle complex subunit 6B-like.
   
  
 0.671
H2XRU8_CIOIN
Uncharacterized protein.
      
 0.671
H2XRN4_CIOIN
TOG domain-containing protein.
      
 0.655
LOC100180447
Rab11 family-interacting protein 3-like.
      
 0.640
LOC100180439
Transmembrane protein 43.
      
 0.623
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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