Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ci-rsp4/6Radial spoke protein RSP4/6. (527 aa)    
Predicted Functional Partners:
ci-rsp9
Radial spoke protein Ci-RSP9.
   
 0.988
Rsp3
Uncharacterized protein.
   
 
 0.988
ci-morn40
Radial spoke protein MORN40.
   
 
 0.986
LOC778840
WD_REPEATS_REGION domain-containing protein.
   
 
 0.948
LOC100175445
Uncharacterized protein.
   
 
 0.928
ci-ndk/dpy26
Radial spoke protein NDK/DPY26; Belongs to the NDK family.
   
 
 0.919
ciic3
Thioredoxin domain-containing protein 3 homolog; May be required during the final stages of sperm tail maturation. May act by reducing disulfide bonds within the sperm components (By similarity).
   
 
 0.917
Ic1
Uncharacterized protein.
   
 
 0.903
L7N0T0_CIOIN
RanBD1 domain-containing protein.
    
 0.891
LOC100177874
Dynein regulatory complex subunit 2 isoform X2.
   
 
 0.876
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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