STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6VJH0_CIOINUncharacterized protein. (1677 aa)    
Predicted Functional Partners:
LOC100176531
Alpha-1,4 glucan phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
  
 
 0.941
F6ZTX2_CIOIN
Alpha-amylase.
  
 
 0.929
F6UM75_CIOIN
Uncharacterized protein.
    
 0.922
F6YLI3_CIOIN
Phosphotransferase.
     
 0.912
H2XUD0_CIOIN
Phosphotransferase.
     
 0.912
H2XKD1_CIOIN
Phosphotransferase.
   
 
 0.911
LOC100182860
Uncharacterized protein LOC100182860 isoform X3.
    
 0.909
F6U2J1_CIOIN
Aamy domain-containing protein.
    
 0.908
F6WLI0_CIOIN
Aamy domain-containing protein.
    
 0.908
F6WLH1_CIOIN
Aamy domain-containing protein.
    
 0.908
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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