Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6TGX7_CIOINUncharacterized protein. (364 aa)    
Predicted Functional Partners:
LOC100183259
Uncharacterized protein.
   
 
 0.965
LOC100185465
U3 small nucleolar ribonucleoprotein protein IMP4-like.
   
 
 0.954
F6QDE3_CIOIN
Bms1-type G domain-containing protein.
   
 0.951
LOC100185508
WD repeat-containing protein 43.
   
 0.936
LOC100182572
Bystin-like.
   
 
 0.931
LOC100180054
U3 small nucleolar RNA-associated protein 4 homolog.
   
 0.928
LOC100176177
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs; Belongs to the RtcB family.
  
  
 0.927
H2XTN0_CIOIN
Uncharacterized protein.
   
 0.926
F6TAD8_CIOIN
CBF domain-containing protein.
   
 
 0.923
LOC100184042
Uncharacterized protein.
   
 
 0.906
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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