STRINGSTRING
abcf3 protein (Ciona intestinalis) - STRING interaction network
"abcf3" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcf3Uncharacterized protein (648 aa)    
Predicted Functional Partners:
ENSCING00000003326
Uncharacterized protein (178 aa)
   
      0.727
abcd4
Uncharacterized protein (641 aa)
     
 
  0.720
abcc4
Uncharacterized protein (1291 aa)
     
 
  0.708
ENSCING00000016262
Uncharacterized protein (353 aa)
     
 
  0.704
ENSCING00000000891
Ribosomal protein (216 aa)
     
 
  0.690
eif2s3
Uncharacterized protein (473 aa)
     
    0.650
ENSCING00000003329
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1141 aa)
     
 
  0.646
gcn1l1
Uncharacterized protein (2637 aa)
     
 
  0.642
ENSCING00000006107
Uncharacterized protein (1293 aa)
     
 
  0.624
ENSCING00000001631
Uncharacterized protein (306 aa)
     
 
  0.619
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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