ENSCINP00000016146 protein (Ciona intestinalis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSCINP00000016146

annotation not available (89 aa)

Predicted Functional Partners:

F6XQM9_CIOIN

0.870

LOC100184673

0.640

F6PPC0_CIOIN

0.618

F6QDH2_CIOIN

0.618

LOC100186454

0.609

F6UE33_CIOIN

0.589

F6YFY0_CIOIN

0.577

F7B860_CIOIN

0.544

LOC100180054

0.540

H2XSS0_CIOIN

0.529

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCINP00000016146	F6PPC0_CIOIN	ENSCINP00000016146	ENSCINP00000004711	annotation not available	Uncharacterized protein.	0.618
ENSCINP00000016146	F6QDH2_CIOIN	ENSCINP00000016146	ENSCINP00000018468	annotation not available	GST C-terminal domain-containing protein.	0.618
ENSCINP00000016146	F6UE33_CIOIN	ENSCINP00000016146	ENSCINP00000005509	annotation not available	SEC7 domain-containing protein.	0.589
ENSCINP00000016146	F6XQM9_CIOIN	ENSCINP00000016146	ENSCINP00000017425	annotation not available	TOG domain-containing protein.	0.870
ENSCINP00000016146	F6YFY0_CIOIN	ENSCINP00000016146	ENSCINP00000008778	annotation not available	Tr-type G domain-containing protein.	0.577
ENSCINP00000016146	F7B860_CIOIN	ENSCINP00000016146	ENSCINP00000003275	annotation not available	ABC transporter domain-containing protein.	0.544
ENSCINP00000016146	H2XSS0_CIOIN	ENSCINP00000016146	ENSCINP00000032704	annotation not available	eIF-5a domain-containing protein.	0.529
ENSCINP00000016146	LOC100180054	ENSCINP00000016146	ENSCINP00000013847	annotation not available	U3 small nucleolar RNA-associated protein 4 homolog.	0.540
ENSCINP00000016146	LOC100184673	ENSCINP00000016146	ENSCINP00000003095	annotation not available	ATP-binding cassette sub-family E member 1.	0.640
ENSCINP00000016146	LOC100186454	ENSCINP00000016146	ENSCINP00000011758	annotation not available	Uncharacterized protein.	0.609
F6PPC0_CIOIN	ENSCINP00000016146	ENSCINP00000004711	ENSCINP00000016146	Uncharacterized protein.	annotation not available	0.618
F6PPC0_CIOIN	F6QDH2_CIOIN	ENSCINP00000004711	ENSCINP00000018468	Uncharacterized protein.	GST C-terminal domain-containing protein.	0.812
F6PPC0_CIOIN	F6XQM9_CIOIN	ENSCINP00000004711	ENSCINP00000017425	Uncharacterized protein.	TOG domain-containing protein.	0.711
F6PPC0_CIOIN	F6YFY0_CIOIN	ENSCINP00000004711	ENSCINP00000008778	Uncharacterized protein.	Tr-type G domain-containing protein.	0.648
F6PPC0_CIOIN	H2XSS0_CIOIN	ENSCINP00000004711	ENSCINP00000032704	Uncharacterized protein.	eIF-5a domain-containing protein.	0.860
F6QDH2_CIOIN	ENSCINP00000016146	ENSCINP00000018468	ENSCINP00000016146	GST C-terminal domain-containing protein.	annotation not available	0.618
F6QDH2_CIOIN	F6PPC0_CIOIN	ENSCINP00000018468	ENSCINP00000004711	GST C-terminal domain-containing protein.	Uncharacterized protein.	0.812
F6QDH2_CIOIN	F6XQM9_CIOIN	ENSCINP00000018468	ENSCINP00000017425	GST C-terminal domain-containing protein.	TOG domain-containing protein.	0.711
F6QDH2_CIOIN	F6YFY0_CIOIN	ENSCINP00000018468	ENSCINP00000008778	GST C-terminal domain-containing protein.	Tr-type G domain-containing protein.	0.648
F6QDH2_CIOIN	H2XSS0_CIOIN	ENSCINP00000018468	ENSCINP00000032704	GST C-terminal domain-containing protein.	eIF-5a domain-containing protein.	0.860