Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6SUC9_CIOINUncharacterized protein. (1841 aa)    
Predicted Functional Partners:
F6Z402_CIOIN
Peptidase S72 domain-containing protein.
    
 0.981
LOC100179911
Uncharacterized protein.
   
 0.948
F6QRL6_CIOIN
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.948
F6XNC0_CIOIN
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.948
F6ZAQ4_CIOIN
Uncharacterized protein.
   
 0.923
F6ZE72_CIOIN
MFS domain-containing protein.
     
 0.911
LOC100178689
VWFA domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.740
H2XLM3_CIOIN
Uncharacterized protein.
   
 0.660
H2XSF6_CIOIN
NIDO domain-containing protein.
   
 0.660
F6T2X8_CIOIN
Integrin_alpha2 domain-containing protein.
    
  0.656
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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