Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100179788Carboxypeptidase B-like. (410 aa)    
Predicted Functional Partners:
LOC100184198
Uncharacterized protein.
     
 0.661
LOC100180498
Uncharacterized protein.
   
  
 0.483
F6X6B7_CIOIN
Peptidase_M14 domain-containing protein.
   
 
 0.465
LOC100180716
60S ribosomal protein L31.
      
 0.430
H2XS46_CIOIN
ABC transporter domain-containing protein.
      
 0.426
LOC100178009
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
 
 0.408
LOC100181838
Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.
   
 
 0.408
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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