Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F7AAE8_CIOINRRM domain-containing protein. (737 aa)    
Predicted Functional Partners:
F6R4T5_CIOIN
Uncharacterized protein.
   
 0.997
LOC100186689
PWI domain-containing protein.
   
 0.995
LOC100187414
RNA-binding protein 39-like.
   
 0.988
F6Z8S6_CIOIN
Uncharacterized protein.
   
 0.984
F6S0J6_CIOIN
Uncharacterized protein.
   
 0.980
F6R6C4_CIOIN
Uncharacterized protein.
   
 
 0.974
F6TZN8_CIOIN
WW domain-containing protein.
   
 0.973
LOC100178584
Uncharacterized protein.
   
 0.971
LOC100178141
U1 small nuclear ribonucleoprotein 70 kDa-like.
   
 
 0.967
F6PKJ4_CIOIN
MIF4G domain-containing protein.
   
 
 0.967
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (18%) [HD]