Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6ZRQ5_CIOINUncharacterized protein. (708 aa)    
Predicted Functional Partners:
F7AQ56_CIOIN
Uncharacterized protein.
      
 0.735
LOC100175648
pre-rRNA-processing protein TSR2 homolog.
      
 0.659
LOC100181824
Bms1-type G domain-containing protein.
      
 0.632
LOC100175606
Homeodomain-interacting protein kinase 2.
      
 0.583
F6XNX3_CIOIN
Uncharacterized protein.
      
 0.553
F6ZMG2_CIOIN
Uncharacterized protein.
      
 0.553
H2XUP8_CIOIN
Ig-like domain-containing protein.
    
 
 0.544
F6W7H5_CIOIN
Rtf2 domain-containing protein.
   
  
 0.529
F6Z7W1_CIOIN
Oxysterol-binding protein; Belongs to the OSBP family.
   
  
 0.525
spt4
Transcription elongation factor SPT4; Component of the DRB sensitivity-inducing factor complex (DSIF complex), which regulates transcription elongation by RNA polymerase II; Belongs to the SPT4 family.
      
 0.510
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (18%) [HD]