Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100176709Transmembrane protein 209 isoform X2. (592 aa)    
Predicted Functional Partners:
LOC100186210
Nucleoporin NDC1.
   
  
 0.866
F6XFL4_CIOIN
Uncharacterized protein.
      
 0.838
F6Z227_CIOIN
Fe2OG dioxygenase domain-containing protein.
      
 0.822
LOC100186389
Transmembrane protein 214-A.
      
 0.732
LOC100182924
Nucleoporin p58/p45.
   
   0.730
F6UMH6_CIOIN
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.727
LOC100185206
Transmembrane protein 161B.
      
 0.678
F6QU62_CIOIN
J domain-containing protein.
      
 0.651
F6S3H3_CIOIN
Hydrolase_4 domain-containing protein.
      
 0.638
F6VKX1_CIOIN
Uridine-cytidine kinase; Belongs to the uridine kinase family.
      
 0.622
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.