STRINGSTRING
rbbp4 protein (Ciona intestinalis) - STRING interaction network
"rbbp4" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbbp4Uncharacterized protein (431 aa)    
Predicted Functional Partners:
Cin.24639
Uncharacterized protein (408 aa)
     
  0.992
mta
MTA protein (661 aa)
     
  0.989
ENSCING00000005024
Uncharacterized protein (493 aa)
     
  0.984
Cin.52569
Histone deacetylase (404 aa)
     
  0.983
ENSCING00000002360
Histone deacetylase (430 aa)
     
  0.981
zf(phd)-2
Uncharacterized protein (818 aa)
     
  0.978
ENSCING00000004590
Uncharacterized protein (1101 aa)
     
  0.973
ENSCING00000015298
Uncharacterized protein (362 aa)
     
  0.972
swi/snf
SWI/SNF protein (1003 aa)
     
  0.960
ENSCING00000007979
Uncharacterized protein (301 aa)
     
  0.957
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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