STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC104265886Histone-binding protein RBBP4. (431 aa)    
Predicted Functional Partners:
F6UZR0_CIOIN
VEFS-Box domain-containing protein.
    
 0.998
LOC100184517
Histone acetyltransferase type B catalytic subunit.
   
 0.996
mta
Ci-MTA protein.
   
 0.993
LOC100180904
Polycomb protein eed.
   
 0.991
Rbp1-like
ARID domain-containing protein.
   
 0.990
F6WQW9_CIOIN
Uncharacterized protein.
    
 0.989
Zf(c2h2)-34
C2H2-type domain-containing protein.
   
 0.974
LOC100176706
Uncharacterized protein.
    
 0.973
F6WEI4_CIOIN
MRG domain-containing protein.
   
 0.968
H2Y0G6_CIOIN
Uncharacterized protein.
   
 0.962
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.