STRINGSTRING
oat protein (Ciona intestinalis) - STRING interaction network
"oat" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oatUncharacterized protein (443 aa)    
Predicted Functional Partners:
ENSCING00000002572
Uncharacterized protein (731 aa)
   
  0.988
ENSCING00000007611
Uncharacterized protein (373 aa)
   
  0.985
ENSCING00000002658
Uncharacterized protein (555 aa)
 
  0.975
ENSCING00000007892
Uncharacterized protein (424 aa)
   
 
  0.949
gmps
Uncharacterized protein (688 aa)
   
   
  0.822
ENSCING00000012827
Uncharacterized protein (287 aa)
   
   
  0.808
ENSCING00000006327
Uncharacterized protein (462 aa)
   
 
  0.801
Cin.27617
Uncharacterized protein (535 aa)
   
   
  0.770
ENSCING00000009493
Uncharacterized protein (298 aa)
   
  0.764
ENSCING00000009488
Uncharacterized protein (341 aa)
   
  0.764
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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