STRINGSTRING
macho1 protein (Ciona intestinalis) - STRING interaction network
"macho1" - Zic related zinc finger protein Ci-macho1 in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macho1Zic related zinc finger protein Ci-macho1 (501 aa)    
Predicted Functional Partners:
LOC778715
Transcription factor protein (1039 aa)
       
  0.915
ENSCING00000008022
Uncharacterized protein (1310 aa)
       
  0.796
ENSCING00000002850
Uncharacterized protein (2241 aa)
     
 
  0.758
gataa
GATAa protein (641 aa)
       
  0.753
act
Act protein (375 aa)
     
  0.742
ENSCING00000004400
Uncharacterized protein (1887 aa)
     
  0.702
ENSCING00000015298
Uncharacterized protein (362 aa)
       
  0.697
Cin.52569
Histone deacetylase (404 aa)
       
  0.697
ENSCING00000002360
Histone deacetylase (430 aa)
       
  0.697
foxf
Transcription factor protein (575 aa)
       
  0.696
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (7%) [HD]