Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100182135Uncharacterized protein. (180 aa)    
Predicted Functional Partners:
LOC100180473
F-box domain-containing protein.
    
 
 0.675
LOC100182997
33 kDa inner dynein arm light chain, axonemal.
    
 
 0.664
F7AB73_CIOIN
Uncharacterized protein.
    
 
 0.610
F7A2F3_CIOIN
Uncharacterized protein.
   
 
 0.569
LOC100180914
Testis-expressed protein 43-like isoform X1.
    
 
 0.561
F6YM31_CIOIN
TYR_PHOSPHATASE_2 domain-containing protein.
      
 0.542
F6TT48_CIOIN
Uncharacterized protein.
    
 
 0.530
LOC100179848
Testis-expressed protein 49-like.
    
 
 0.529
F7A7P7_CIOIN
Enkurin domain-containing protein.
    
 
 0.528
LOC100177416
Sperm-associated antigen 8-like.
    
 
 0.518
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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