LOC100177936 protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC100177936

Uncharacterized protein. (707 aa)

Predicted Functional Partners:

F6THC9_CIOIN

0.999

LOC100181141

0.961

F6UJ45_CIOIN

0.958

H2XQG7_CIOIN

0.956

F6U1L2_CIOIN

0.948

LOC100181154

0.932

LOC100186673

0.932

F6TZ79_CIOIN

0.932

LOC101242316

0.931

F6VR09_CIOIN

0.927

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F6THC9_CIOIN	F6TZ79_CIOIN	ENSCINP00000016122	ENSCINP00000025976	Uncharacterized protein.	Acyl-CoA_dh_M domain-containing protein.	0.946
F6THC9_CIOIN	F6U1L2_CIOIN	ENSCINP00000016122	ENSCINP00000001630	Uncharacterized protein.	Uncharacterized protein.	0.952
F6THC9_CIOIN	F6UJ45_CIOIN	ENSCINP00000016122	ENSCINP00000003445	Uncharacterized protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.970
F6THC9_CIOIN	F6VR09_CIOIN	ENSCINP00000016122	ENSCINP00000012665	Uncharacterized protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.942
F6THC9_CIOIN	H2XQG7_CIOIN	ENSCINP00000016122	ENSCINP00000031901	Uncharacterized protein.	VOC domain-containing protein.	0.982
F6THC9_CIOIN	LOC100177936	ENSCINP00000016122	ENSCINP00000016533	Uncharacterized protein.	Uncharacterized protein.	0.999
F6THC9_CIOIN	LOC100181141	ENSCINP00000016122	ENSCINP00000018880	Uncharacterized protein.	Uncharacterized protein.	0.576
F6THC9_CIOIN	LOC100181154	ENSCINP00000016122	ENSCINP00000004269	Uncharacterized protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.946
F6THC9_CIOIN	LOC100186673	ENSCINP00000016122	ENSCINP00000023072	Uncharacterized protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.941
F6THC9_CIOIN	LOC101242316	ENSCINP00000016122	ENSCINP00000019425	Uncharacterized protein.	3-ketoacyl-CoA thiolase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	0.942
F6TZ79_CIOIN	F6THC9_CIOIN	ENSCINP00000025976	ENSCINP00000016122	Acyl-CoA_dh_M domain-containing protein.	Uncharacterized protein.	0.946
F6TZ79_CIOIN	F6U1L2_CIOIN	ENSCINP00000025976	ENSCINP00000001630	Acyl-CoA_dh_M domain-containing protein.	Uncharacterized protein.	0.830
F6TZ79_CIOIN	F6UJ45_CIOIN	ENSCINP00000025976	ENSCINP00000003445	Acyl-CoA_dh_M domain-containing protein.	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.	0.926
F6TZ79_CIOIN	F6VR09_CIOIN	ENSCINP00000025976	ENSCINP00000012665	Acyl-CoA_dh_M domain-containing protein.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.975
F6TZ79_CIOIN	LOC100177936	ENSCINP00000025976	ENSCINP00000016533	Acyl-CoA_dh_M domain-containing protein.	Uncharacterized protein.	0.932
F6TZ79_CIOIN	LOC100181141	ENSCINP00000025976	ENSCINP00000018880	Acyl-CoA_dh_M domain-containing protein.	Uncharacterized protein.	0.450
F6TZ79_CIOIN	LOC100181154	ENSCINP00000025976	ENSCINP00000004269	Acyl-CoA_dh_M domain-containing protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.901
F6TZ79_CIOIN	LOC100186673	ENSCINP00000025976	ENSCINP00000023072	Acyl-CoA_dh_M domain-containing protein.	Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.	0.947
F6TZ79_CIOIN	LOC101242316	ENSCINP00000025976	ENSCINP00000019425	Acyl-CoA_dh_M domain-containing protein.	3-ketoacyl-CoA thiolase, mitochondrial; Belongs to the thiolase-like superfamily. Thiolase family.	0.974
F6U1L2_CIOIN	F6THC9_CIOIN	ENSCINP00000001630	ENSCINP00000016122	Uncharacterized protein.	Uncharacterized protein.	0.952