STRINGSTRING
syn protein (Ciona intestinalis) - STRING interaction network
"syn" - Synapsin in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
synSynapsin (519 aa)    
Predicted Functional Partners:
syt1
Synaptotagmin (328 aa)
     
 
  0.627
camk2d
Uncharacterized protein (477 aa)
     
  0.626
ENSCING00000021593
Uncharacterized protein (220 aa)
     
 
  0.595
ENSCING00000015685
Synaptosomal-associated protein (160 aa)
     
 
  0.584
ENSCING00000006714
Uncharacterized protein (118 aa)
     
 
  0.541
ENSCING00000004817
Uncharacterized protein (445 aa)
     
  0.531
zf(rab)-2
Uncharacterized protein (948 aa)
     
 
  0.507
ENSCING00000019207
Uncharacterized protein (358 aa)
     
 
  0.494
ENSCING00000002400
Uncharacterized protein (588 aa)
     
  0.488
ENSCING00000008616
Uncharacterized protein (149 aa)
     
   
  0.466
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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