Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6Z672_CIOINUncharacterized protein. (648 aa)    
Predicted Functional Partners:
LOC100187471
Uncharacterized protein; Belongs to the RNR ribonuclease family.
   
 0.794
F6TAK3_CIOIN
PUM-HD domain-containing protein.
    
 
 0.751
LOC100175182
RNA helicase.
   
 
 0.685
F6SIX8_CIOIN
WD_REPEATS_REGION domain-containing protein.
   
  
 0.648
F6RIY5_CIOIN
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.
    
 
 0.625
F6TST6_CIOIN
Lactamase_B domain-containing protein.
   
  
 0.620
F6UQQ5_CIOIN
Uncharacterized protein.
   
 
 0.613
F6XFV9_CIOIN
Uncharacterized protein.
   
 
 0.613
H2XPJ8_CIOIN
AAA_11 domain-containing protein.
   
 
 0.613
H2XXL6_CIOIN
C3H1-type domain-containing protein.
   
 
 0.613
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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