STRINGSTRING
arnt protein (Ciona intestinalis) - STRING interaction network
"arnt" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arntTranscription factor protein (545 aa)    
Predicted Functional Partners:
ENSCING00000021869
Uncharacterized protein (286 aa)
     
  0.987
hif
Transcription factor protein (531 aa)
     
0.977
trh
Transcription factor protein (753 aa)
     
0.967
ahr
Transcription factor protein (865 aa)
       
0.896
ENSCING00000022083
Uncharacterized protein (294 aa)
       
 
  0.872
ENSCING00000013819
Uncharacterized protein (727 aa)
       
      0.677
cbp
Uncharacterized protein (1533 aa)
     
  0.652
ENSCING00000001903
Uncharacterized protein (324 aa)
         
  0.541
ENSCING00000012576
Uncharacterized protein (666 aa)
           
  0.445
ENSCING00000003436
Zinc finger protein (417 aa)
       
    0.403
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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