Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6YN32_CIOINExonuclease domain-containing protein. (155 aa)    
Predicted Functional Partners:
H2XKK2_CIOIN
EloA-BP1 domain-containing protein.
 
     0.922
F6SEU1_CIOIN
Pan3_PK domain-containing protein.
    
 0.522
F6PH64_CIOIN
Uncharacterized protein; Belongs to the DEAD box helicase family.
  
 0.513
LOC100184693
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.503
LOC100182087
WD repeat-containing protein 61-like.
      
 0.488
H2Y058_CIOIN
Uncharacterized protein.
   
 
 0.483
zf(c3h)-5
tRNA-dihydrouridine(47) synthase [NAD(P)(+)].
   
  
 0.466
LOC100182618
Ipi1_N domain-containing protein.
   
 
  0.448
F6XG50_CIOIN
Exonuclease domain-containing protein.
    
 
 0.426
LOC100176897
Uncharacterized protein.
   
 
 0.419
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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