Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6YN20_CIOINUncharacterized protein. (347 aa)    
Predicted Functional Partners:
spata4
Calponin-homology (CH) domain-containing protein.
   
 
 0.846
H2XP59_CIOIN
Uncharacterized protein.
      
 0.742
F6XBR0_CIOIN
Uncharacterized protein.
      
 0.653
F6Q2Q3_CIOIN
BTB domain-containing protein.
      
 0.648
F7B623_CIOIN
MIEAP domain-containing protein.
      
 0.642
Rbp1-like
ARID domain-containing protein.
      
 0.639
LOC100186379
G patch domain-containing protein 2.
      
 0.639
F6UHL0_CIOIN
Uncharacterized protein.
      
 0.625
H2XRU0_CIOIN
Sec8_exocyst domain-containing protein.
   
 0.621
F6YP95_CIOIN
Guanylate kinase-like domain-containing protein.
    
 
 0.614
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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