Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC100177362Palmitoyl-protein thioesterase 1. (292 aa)    
Predicted Functional Partners:
F6T0U6_CIOIN
Uncharacterized protein.
     
0.932
LOC100185939
AMP-binding domain-containing protein.
   
 
 0.923
F6SZU4_CIOIN
AMP-binding domain-containing protein.
   
 
 0.923
F7A961_CIOIN
Uncharacterized protein; Belongs to the CTL (choline transporter-like) family.
   
  
 0.840
F6YD02_CIOIN
Hydrolase_4 domain-containing protein.
  
  
 0.731
H2XUE7_CIOIN
BTB domain-containing protein.
      
 0.727
F6YSQ6_CIOIN
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.683
F6PXX9_CIOIN
Uncharacterized protein.
   
 
 0.673
LOC100184047
60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family.
      
 0.665
LOC100180902
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
      
 0.650
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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