STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100178657SWIM-type domain-containing protein. (751 aa)    
Predicted Functional Partners:
LOC100185254
Chromatin modification-related protein MEAF6-like isoform X2.
    
 0.714
Rbp1-like
ARID domain-containing protein.
   
 0.658
F6PU76_CIOIN
Enhancer of polycomb-like protein.
    
 0.609
F6XLA1_CIOIN
Uncharacterized protein.
    
 0.599
LOC100183508
MRG/MORF4L-binding protein-like.
    
 0.593
F6SPZ6_CIOIN
HDAC_interact domain-containing protein.
   
 
 0.548
LOC104265886
Histone-binding protein RBBP4.
   
 0.522
LOC100185398
Actin-like protein 6B; Belongs to the actin family.
    
 0.509
zf(c2hc)-2
Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.
    
 0.474
F6QNK0_CIOIN
TAF domain-containing protein.
    
 0.474
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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