F6UQQ5_CIOIN protein (Ciona intestinalis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

F6UQQ5_CIOIN

Uncharacterized protein. (382 aa)

Predicted Functional Partners:

H2XXL6_CIOIN

0.881

F6U3S7_CIOIN

0.800

F6RIW3_CIOIN

0.800

LOC100182540

0.792

LOC100183089

0.783

ENSCINP00000011586

0.772

LOC100184256

0.740

H2XUI3_CIOIN

0.739

H2XJM9_CIOIN

0.732

H2XU65_CIOIN

0.721

Your Current Organism:

Ciona intestinalis

NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCINP00000011586	F6RIW3_CIOIN	ENSCINP00000011586	ENSCINP00000025449	Uncharacterized protein.	Uncharacterized protein.	0.866
ENSCINP00000011586	F6U3S7_CIOIN	ENSCINP00000011586	ENSCINP00000011574	Uncharacterized protein.	OB_NTP_bind domain-containing protein.	0.866
ENSCINP00000011586	F6UQQ5_CIOIN	ENSCINP00000011586	ENSCINP00000016680	Uncharacterized protein.	Uncharacterized protein.	0.772
ENSCINP00000011586	H2XJM9_CIOIN	ENSCINP00000011586	ENSCINP00000029861	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSCINP00000011586	H2XU65_CIOIN	ENSCINP00000011586	ENSCINP00000033199	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.999
ENSCINP00000011586	H2XUI3_CIOIN	ENSCINP00000011586	ENSCINP00000033317	Uncharacterized protein.	Uncharacterized protein.	0.999
ENSCINP00000011586	H2XXL6_CIOIN	ENSCINP00000011586	ENSCINP00000034400	Uncharacterized protein.	C3H1-type domain-containing protein.	0.772
ENSCINP00000011586	LOC100182540	ENSCINP00000011586	ENSCINP00000006656	Uncharacterized protein.	Uncharacterized protein.	0.993
ENSCINP00000011586	LOC100183089	ENSCINP00000011586	ENSCINP00000008738	Uncharacterized protein.	Exosome complex component RRP43.	0.999
ENSCINP00000011586	LOC100184256	ENSCINP00000011586	ENSCINP00000009867	Uncharacterized protein.	Exosome complex component RRP42-like.	0.999
F6RIW3_CIOIN	ENSCINP00000011586	ENSCINP00000025449	ENSCINP00000011586	Uncharacterized protein.	Uncharacterized protein.	0.866
F6RIW3_CIOIN	F6U3S7_CIOIN	ENSCINP00000025449	ENSCINP00000011574	Uncharacterized protein.	OB_NTP_bind domain-containing protein.	0.971
F6RIW3_CIOIN	F6UQQ5_CIOIN	ENSCINP00000025449	ENSCINP00000016680	Uncharacterized protein.	Uncharacterized protein.	0.800
F6RIW3_CIOIN	H2XJM9_CIOIN	ENSCINP00000025449	ENSCINP00000029861	Uncharacterized protein.	Uncharacterized protein.	0.923
F6RIW3_CIOIN	H2XU65_CIOIN	ENSCINP00000025449	ENSCINP00000033199	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.787
F6RIW3_CIOIN	H2XUI3_CIOIN	ENSCINP00000025449	ENSCINP00000033317	Uncharacterized protein.	Uncharacterized protein.	0.897
F6RIW3_CIOIN	H2XXL6_CIOIN	ENSCINP00000025449	ENSCINP00000034400	Uncharacterized protein.	C3H1-type domain-containing protein.	0.800
F6RIW3_CIOIN	LOC100182540	ENSCINP00000025449	ENSCINP00000006656	Uncharacterized protein.	Uncharacterized protein.	0.931
F6RIW3_CIOIN	LOC100183089	ENSCINP00000025449	ENSCINP00000008738	Uncharacterized protein.	Exosome complex component RRP43.	0.790
F6RIW3_CIOIN	LOC100184256	ENSCINP00000025449	ENSCINP00000009867	Uncharacterized protein.	Exosome complex component RRP42-like.	0.871