Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Zf(cchc)-16Uncharacterized protein. (222 aa)    
Predicted Functional Partners:
LOC100182540
Uncharacterized protein.
   
 0.772
zf(cchc)-11
CCHC-type domain-containing protein.
      
 0.738
F7BBT3_CIOIN
Tr-type G domain-containing protein.
      
 0.733
F6ZDT1_CIOIN
Exonuclease domain-containing protein.
   
   0.718
LOC100183193
Non-canonical poly(A) RNA polymerase PAPD5.
   
 0.703
H2XJM9_CIOIN
Uncharacterized protein.
   
 
 0.697
LOC100177492
U3 small nucleolar ribonucleoprotein protein IMP3.
   
   0.593
F6XLM7_CIOIN
DALR_1 domain-containing protein.
   
 
 0.583
Zf(cchc)-22
Uncharacterized protein.
      
 0.580
H2Y1V2_CIOIN
SURF6 domain-containing protein.
   
 
 0.572
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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