Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100182845Proteasome subunit alpha type-4-like. (91 aa)    
Predicted Functional Partners:
F6PP61_CIOIN
Proteasome subunit beta; Belongs to the peptidase T1B family.
   
 0.999
LOC100183036
Proteasome subunit alpha type.
   
 0.999
F6RUQ3_CIOIN
Proteasome subunit alpha type.
   
 0.999
LOC100177476
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
   
 0.999
LOC100176760
Proteasome subunit alpha type.
   
 0.999
F6Z491_CIOIN
Proteasome subunit alpha type.
   
 0.999
LOC113474124
Proteasome subunit beta.
   
 0.999
F6SDU1_CIOIN
PCI domain-containing protein.
   
 0.999
LOC100179683
26S proteasome non-ATPase regulatory subunit 14.
   
 0.999
H2XSU1_CIOIN
Proteasome subunit beta.
   
 0.999
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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