Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC100176500Putative ferric-chelate reductase 1. (619 aa)    
Predicted Functional Partners:
F7BL09_CIOIN
Uncharacterized protein.
   
   0.555
LOC100175965
39S ribosomal protein L3, mitochondrial-like.
   
   0.548
F6PZ15_CIOIN
MRP-S28 domain-containing protein.
   
   0.520
LOC100187383
39S ribosomal protein L13, mitochondrial-like.
   
 
 0.506
LOC100187432
39S ribosomal protein L11, mitochondrial-like; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.493
LOC100178125
28S ribosomal protein S16, mitochondrial-like isoform X2.
   
 
 0.491
F6R725_CIOIN
Uncharacterized protein.
   
 
 0.487
H2XPC5_CIOIN
Ribosomal_L16 domain-containing protein.
   
   0.487
F6WQI3_CIOIN
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
   0.482
F7APG8_CIOIN
Uncharacterized protein.
   
   0.475
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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