Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6T3V6_CIOINSH3 domain-containing protein. (573 aa)    
Predicted Functional Partners:
F6WUP4_CIOIN
Uncharacterized protein; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
 0.622
F7A8L8_CIOIN
Uncharacterized protein.
   
 0.612
LOC100181871
t-SNARE coiled-coil homology domain-containing protein.
    
 0.597
LOC100182843
Uncharacterized protein.
   
 0.566
H2XU61_CIOIN
Uncharacterized protein.
    
 0.559
F6QTW3_CIOIN
Tyrosine-protein kinase.
    
 0.541
F6WA29_CIOIN
Uso1_p115_C domain-containing protein.
   
 0.522
F6W9R3_CIOIN
Uncharacterized protein.
   
 0.522
H2XS84_CIOIN
Uncharacterized protein.
   
 0.509
LOC100186275
Uncharacterized protein.
   
 0.509
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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