STRINGSTRING
rgc protein (Ciona intestinalis) - STRING interaction network
"rgc" - Glycine rich RNA binding protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rgcGlycine rich RNA binding protein (159 aa)    
Predicted Functional Partners:
ENSCING00000001546
Uncharacterized protein (1185 aa)
     
  0.940
ENSCING00000003455
Uncharacterized protein (482 aa)
     
  0.895
ENSCING00000009501
Uncharacterized protein (213 aa)
     
  0.887
prpf19
Uncharacterized protein (437 aa)
     
  0.887
ENSCING00000021276
Uncharacterized protein (472 aa)
     
  0.886
ENSCING00000023790
Uncharacterized protein (1081 aa)
   
      0.884
ENSCING00000005564
Zinc finger protein ZF(CCHC)-13 (494 aa)
     
  0.883
ENSCING00000008407
Uncharacterized protein (534 aa)
     
  0.875
ENSCING00000006985
Uncharacterized protein (852 aa)
     
  0.866
cdc40
Uncharacterized protein (504 aa)
     
  0.855
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
Server load: low (12%) [HD]