STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
F6XQM9_CIOINTOG domain-containing protein. (2637 aa)    
Predicted Functional Partners:
F6XBT4_CIOIN
Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.
 
 
   0.940
LOC100180815
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
 
 0.924
LOC100179994
Developmentally-regulated GTP-binding protein 2-like.
   
 
 0.897
LOC101243528
Uncharacterized protein.
   
 
 0.875
ENSCINP00000016146
annotation not available
   
 
 0.875
LOC100183019
Uncharacterized protein; Belongs to the universal ribosomal protein uS19 family.
   
 
 0.862
rps13
40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.
   
 
 0.861
H2XWE4_CIOIN
S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.844
LOC100184857
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
   
 
 0.843
LOC100179473
Guanine nucleotide-binding protein subunit beta-2-like 1.
   
 
 0.842
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.