STRINGSTRING
ipo7 protein (Ciona intestinalis) - STRING interaction network
"ipo7" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ipo7Uncharacterized protein (1067 aa)    
Predicted Functional Partners:
ENSCING00000003016
Uncharacterized protein (737 aa)
     
      0.933
Cin.19146
Uncharacterized protein ; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle (161 aa)
     
  0.930
ipo5
Uncharacterized protein (1110 aa)
     
 
  0.890
ipo9
Uncharacterized protein (1011 aa)
     
 
  0.866
ENSCING00000003329
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1141 aa)
     
 
    0.849
ENSCING00000012896
Uncharacterized protein (526 aa)
     
      0.826
ENSCING00000019533
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (225 aa)
     
 
  0.805
ENSCING00000025128
DNA-directed RNA polymerase ; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (207 aa)
     
 
  0.805
ENSCING00000007684
Uncharacterized protein (749 aa)
     
 
  0.805
ENSCING00000021983
Uncharacterized protein (1422 aa)
     
  0.797
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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