STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100187315Uncharacterized protein. (1073 aa)    
Predicted Functional Partners:
H2XNV6_CIOIN
DUF3677 domain-containing protein.
   
 0.999
F6UQJ9_CIOIN
VWFA domain-containing protein.
    
 0.984
F6RSZ1_CIOIN
Uncharacterized protein.
   
 0.982
LOC100179349
Integrator complex subunit 8-like.
   
 0.980
F7BN02_CIOIN
INTS5_C domain-containing protein.
   
 0.972
H2XZK3_CIOIN
INTS5_N domain-containing protein.
   
 0.972
H2XP55_CIOIN
Uncharacterized protein.
    
 0.970
LOC100186018
Integrator complex subunit 11-like.
    
 0.967
H2XLM2_CIOIN
Uncharacterized protein.
   
 0.957
F6XWB1_CIOIN
Uncharacterized protein.
   
 0.939
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.