Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6ZY58_CIOINPeptidase_M28 domain-containing protein. (554 aa)    
Predicted Functional Partners:
LOC100177683
Transmembrane protein 147-like.
    
 
 0.982
F6VG31_CIOIN
Uncharacterized protein.
   
 
 0.932
LOC100185712
Uncharacterized protein.
    
 
 0.916
F6T8P3_CIOIN
Uncharacterized protein.
   
   0.911
F6VKC0_CIOIN
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
   
 
 0.891
LOC100186050
Uncharacterized protein.
      
 0.835
F6ZM86_CIOIN
Plug_translocon domain-containing protein.
   
 
 0.826
F6TI55_CIOIN
Uncharacterized protein.
   
  
 0.819
LOC100180439
Transmembrane protein 43.
      
 0.817
LOC100181474
Epimerase family protein SDR39U1 isoform X1.
      
 0.817
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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