STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100176875Hippocalcin-like protein 4. (202 aa)    
Predicted Functional Partners:
F6W2N4_CIOIN
Uncharacterized protein.
    
 0.643
F6R9A6_CIOIN
Uncharacterized protein.
    
 0.643
H2XJZ0_CIOIN
Guanylate kinase-like domain-containing protein.
    
 0.643
F7BIS1_CIOIN
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.548
F6REB0_CIOIN
BTB domain-containing protein; Belongs to the potassium channel family.
    
 0.534
F6YP95_CIOIN
Guanylate kinase-like domain-containing protein.
    
 0.497
LOC100182193
Ras-related protein Rab-5B.
   
  
 0.474
F7AB73_CIOIN
Uncharacterized protein.
    
 
 0.443
F6PLQ2_CIOIN
Uncharacterized protein; Belongs to the MAGUK family.
    
  0.405
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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