Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100181424Uncharacterized protein. (719 aa)    
Predicted Functional Partners:
F6WA81_CIOIN
Phospholipase.
   
 
 0.801
LOC100186551
CTP_transf_like domain-containing protein.
    
 
 0.765
F6WRK0_CIOIN
Protein phosphatase; Belongs to the PP2C family.
   
   0.705
LOC100182691
SAC domain-containing protein.
    
 
 0.669
F6Y1X1_CIOIN
Uncharacterized protein; Belongs to the CD36 family.
   
  
 0.646
F7BIS1_CIOIN
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 
 0.605
F6QH36_CIOIN
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
      
 0.581
LOC100184292
ADP-ribosylation factor-related protein 1-like.
    
   0.531
LOC100186785
Uncharacterized protein.
    
 
 0.522
H2XNY0_CIOIN
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 
 0.521
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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