Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
F6T065_CIOINSAM domain-containing protein. (494 aa)    
Predicted Functional Partners:
LOC100175135
Uncharacterized protein LOC100175135; Belongs to the nanos family.
    
 
 0.923
LOC100186938
Cytoplasmic aconitate hydratase; Belongs to the aconitase/IPM isomerase family.
    
 
 0.697
LOC100180841
Uncharacterized protein.
      
 0.670
H2XX77_CIOIN
CSP domain-containing protein.
    
 
 0.639
F6RGX1_CIOIN
UBIQUITIN_CONJUGAT_2 domain-containing protein.
      
 0.624
F6WRR9_CIOIN
Uncharacterized protein.
      
 0.573
LOC100176938
WD repeat-containing protein 5.
    
 
 0.562
F6YNJ1_CIOIN
HATPase_c domain-containing protein.
    
 
 0.539
F6TAK3_CIOIN
PUM-HD domain-containing protein.
    
 
 0.532
LOC100187049
Endo/exonuclease/phosphatase domain-containing protein.
    
 
 0.532
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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