Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NachrUncharacterized protein. (357 aa)    
Predicted Functional Partners:
nachr-3
Uncharacterized protein.
  
 
0.944
nachr-5
Nicotinic acetylcholine receptor subunit precursor.
  
  
 
0.909
nachr-2
Nicotinic acetylcholine receptor subunit precursor.
  
  
 
0.907
Nachr-2
Uncharacterized protein.
  
  
 
0.907
nachr
Uncharacterized protein.
  
  
 
0.906
Nachr-4
Uncharacterized protein.
  
  
 
0.905
nachr-4
Acetylcholine receptor subunit beta-like precursor.
  
  
 
0.902
H2XNI5_CIOIN
Ig-like domain-containing protein.
  
     0.451
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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