Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
F6R4D8_CIOINRab-GAP TBC domain-containing protein. (590 aa)    
Predicted Functional Partners:
COS41.2
Putative Ras-related protein Rab-33.
     
 0.920
LOC100186367
Gamma-aminobutyric acid receptor-associated protein.
   
 0.910
LOC100175025
Putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase; Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs.
      
 0.741
LOC100183150
WD repeat-containing protein 13-like.
   
  
 0.716
LOC100178332
Ras-related protein Rab-9B-like.
   
 0.675
LOC100178444
Microtubule-associated proteins 1A/1B light chain 3B-like.
   
 0.660
F6Z156_CIOIN
Uncharacterized protein.
     
 0.602
LOC100184699
TBC1 domain family member 23-like.
   
  
 0.578
H2XXY3_CIOIN
Uncharacterized protein.
      
 0.577
F6SSU2_CIOIN
TPR_REGION domain-containing protein.
      
 0.552
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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