STRINGSTRING
pepd protein (Ciona intestinalis) - STRING interaction network
"pepd" - Uncharacterized protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepdUncharacterized protein (504 aa)    
Predicted Functional Partners:
Cin.28765
Uncharacterized protein (267 aa)
       
      0.904
ENSCING00000002850
Uncharacterized protein (2241 aa)
   
   
  0.776
ENSCING00000005542
Uncharacterized protein (450 aa)
   
 
  0.627
ENSCING00000019976
Uncharacterized protein (555 aa)
   
 
  0.627
ci-htf-1
Transcription factor ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1297 aa)
   
   
  0.599
ENSCING00000007544
Uncharacterized protein (1596 aa)
   
   
  0.592
impdh2
Inosine-5’-monophosphate dehydrogenase (384 aa)
   
 
  0.547
ENSCING00000002929
Uncharacterized protein (934 aa)
   
 
  0.544
ENSCING00000007699
Uncharacterized protein (983 aa)
         
  0.531
ENSCING00000005470
Methionine aminopeptidase ; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (474 aa)
   
   
  0.523
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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