STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snailUncharacterized protein. (584 aa)    
Predicted Functional Partners:
LOC100187100
Lysine-specific histone demethylase 1A.
    
 0.716
tbx6b
Uncharacterized protein.
    
 0.632
brachyury
Uncharacterized protein.
    
 0.629
soxE
SoxE protein.
    
 
 0.585
Fgf9/16/20
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.568
gsk
Glycogen synthase kinase Alpha/beta.
   
 
 0.556
Cibeta-catenin
Uncharacterized protein.
      
 0.539
Bmp2/4
TGFb_propeptide domain-containing protein.
   
  
 0.537
SoxB1
HMG box domain-containing protein.
    
 
 0.533
LOC100184556
Uncharacterized protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 
 0.529
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: Ascidia intestinalis, C. intestinalis, sea vase, vase tunicate, yellow sea squirt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.