STRINGSTRING
snail protein (Ciona intestinalis) - STRING interaction network
"snail" - Transcription factor protein in Ciona intestinalis
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snailTranscription factor protein (584 aa)    
Predicted Functional Partners:
ENSCING00000004639
Uncharacterized protein (883 aa)
       
      0.847
ENSCING00000009574
Uncharacterized protein (754 aa)
       
      0.673
ENSCING00000008707
Uncharacterized protein (347 aa)
       
      0.673
smad4
Smad4 protein (527 aa)
       
  0.571
pax3/7
Uncharacterized protein (673 aa)
           
  0.564
bmp2/4
Transforming growth factor beta superfamily signaling ligand precursor (376 aa)
           
  0.562
msxb
Msxb homeoprotein (327 aa)
           
  0.509
soxE
SoxE protein; Uncharacterized protein (808 aa)
           
  0.503
ENSCING00000015619
Uncharacterized protein (995 aa)
           
  0.503
ENSCING00000007020
Uncharacterized protein (273 aa)
         
  0.497
Your Current Organism:
Ciona intestinalis
NCBI taxonomy Id: 7719
Other names: C. intestinalis, Ciona intestinalis
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